Details for Phenotype: Seed perimeter (ID: 66)

Phenotype ID:
66
Name:
Seed perimeter
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed morphology trait
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Perimeter of an individual seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_24ANN103713.365825United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN103814.4451625United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN103915.4489United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN104014.2270125United StatesNevada39.48892-119.99511
Helianthus annuusANN_25ANN104511.387975United StatesNevada36.79654-114.09841
Helianthus annuusANN_25ANN104613.7658375United StatesNevada36.79654-114.09841
Helianthus annuusANN_26ANN105110.587575United StatesUtah37.13733-113.51348
Helianthus annuusANN_27ANN106112.376775United StatesUtah37.13137-112.56561
Helianthus annuusANN_27ANN106213.01725United StatesUtah37.13137-112.56561
Helianthus annuusANN_27ANN106812.3387375United StatesUtah37.13137-112.56561
Helianthus annuusANN_27ANN106913.9145United StatesUtah37.13137-112.56561
Helianthus annuusANN_27ANN107014.50295United StatesUtah37.13137-112.56561
Helianthus annuusANN_28ANN107113.722425United StatesUtah38.21652-112.64767
Helianthus annuusANN_28ANN107213.9492875United StatesUtah38.21652-112.64767
Helianthus annuusANN_28ANN107314.509025United StatesUtah38.21652-112.64767
Helianthus annuusANN_28ANN107512.9147United StatesUtah38.21652-112.64767
Helianthus annuusANN_28ANN107614.072275United StatesUtah38.21652-112.64767
Helianthus annuusANN_28ANN107714.706625United StatesUtah38.21652-112.64767
Helianthus annuusANN_28ANN107814.8100125United StatesUtah38.21652-112.64767
Helianthus annuusANN_28ANN107914.439United StatesUtah38.21652-112.64767
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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