Details for Phenotype: Seed perimeter (ID: 66)

Phenotype ID:
66
Name:
Seed perimeter
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed morphology trait
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Perimeter of an individual seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_16ANN095813.4344125United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN095913.3868875United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN096014.01015United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_17ANN096114.318425United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_17ANN096214.48435United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_17ANN096714.7015875United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_17ANN096813.5428United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_17ANN096914.0119375United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_17ANN097013.388075United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_18ANN097214.3899625United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_18ANN097512.7588125United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_18ANN097613.3810375United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_18ANN097713.9253875United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_18ANN097812.9777625United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_18ANN098015.2662375United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_19ANN098113.551275United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN098212.7429375United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN098312.6865875United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN098411.9551United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN098513.5495625United StatesNew Mexico36.7268-104.01913
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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