Details for Phenotype: Seed perimeter (ID: 66)

Phenotype ID:
66
Name:
Seed perimeter
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed morphology trait
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Perimeter of an individual seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_13ANN092913.2077625United StatesArizona34.75056-112.01697
Helianthus annuusANN_14ANN093111.61735United StatesArizona36.1086-111.24184
Helianthus annuusANN_14ANN093212.013675United StatesArizona36.1086-111.24184
Helianthus annuusANN_14ANN093313.1007375United StatesArizona36.1086-111.24184
Helianthus annuusANN_14ANN093413.2540375United StatesArizona36.1086-111.24184
Helianthus annuusANN_14ANN093911.4403United StatesArizona36.1086-111.24184
Helianthus annuusANN_14ANN094012.6485625United StatesArizona36.1086-111.24184
Helianthus annuusANN_15ANN094315.7709375United StatesArizona35.03852-110.7351
Helianthus annuusANN_15ANN094415.104675United StatesArizona35.03852-110.7351
Helianthus annuusANN_15ANN094715.1691United StatesArizona35.03852-110.7351
Helianthus annuusANN_15ANN094815.0262United StatesArizona35.03852-110.7351
Helianthus annuusANN_15ANN094915.245075United StatesArizona35.03852-110.7351
Helianthus annuusANN_15ANN095015.3835875United StatesArizona35.03852-110.7351
Helianthus annuusANN_16ANN095113.758425United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN095214.4925125United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN095313.3982125United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN095412.7549United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN095514.5125625United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN095613.5456625United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN095713.2677United StatesNew Mexico35.40041-108.23557
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
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dominik.grimm [at] hswt.de

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