Details for Phenotype: Seed perimeter (ID: 66)

Phenotype ID:
66
Name:
Seed perimeter
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed morphology trait
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Perimeter of an individual seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_10ANN089311.88015United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_10ANN089411.515025United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_10ANN089711.783075United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_10ANN089813.155975United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_11ANN090115.5361875United StatesArizona35.19566-114.06666
Helianthus annuusANN_11ANN090215.7493125United StatesArizona35.19566-114.06666
Helianthus annuusANN_11ANN090313.43645United StatesArizona35.19566-114.06666
Helianthus annuusANN_11ANN090715.99411667United StatesArizona35.19566-114.06666
Helianthus annuusANN_11ANN090816.16718United StatesArizona35.19566-114.06666
Helianthus annuusANN_12ANN091115.9589375United StatesArizona35.2533-112.13355
Helianthus annuusANN_12ANN091213.531525United StatesArizona35.2533-112.13355
Helianthus annuusANN_12ANN091312.9371875United StatesArizona35.2533-112.13355
Helianthus annuusANN_12ANN091414.6444375United StatesArizona35.2533-112.13355
Helianthus annuusANN_12ANN091915.68235United StatesArizona35.2533-112.13355
Helianthus annuusANN_12ANN092013.5164United StatesArizona35.2533-112.13355
Helianthus annuusANN_13ANN092112.683625United StatesArizona34.75056-112.01697
Helianthus annuusANN_13ANN092212.83665United StatesArizona34.75056-112.01697
Helianthus annuusANN_13ANN092313.774825United StatesArizona34.75056-112.01697
Helianthus annuusANN_13ANN092413.13062United StatesArizona34.75056-112.01697
Helianthus annuusANN_13ANN092712.9441125United StatesArizona34.75056-112.01697
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
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dominik.grimm [at] hswt.de

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