Details for Phenotype: Seed perimeter (ID: 66)

Phenotype ID:
66
Name:
Seed perimeter
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed morphology trait
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Perimeter of an individual seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_55ANN134113.0662375United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN134211.49865United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN134311.6726United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN134411.2496125United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN134513.4314United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN134611.5488United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN134712.127325United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN134811.3667United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN135011.246675United StatesTexas28.66061-96.58348
Helianthus annuusANN_56ANN135113.0756375United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN135211.80715United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN135313.268275United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN135415.19955United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN135513.655675United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN135611.6304375United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN135912.8615625United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN136012.530175United StatesTexas28.08852-97.06011
Helianthus annuusANN_57ANN136111.037175United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN136315.22705United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN136414.9242875United StatesTexas27.63854-97.24526
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
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dominik.grimm [at] hswt.de

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