Details for Phenotype: Seed perimeter (ID: 66)

Phenotype ID:
66
Name:
Seed perimeter
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed morphology trait
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Perimeter of an individual seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_52ANN132013.7459375United StatesTexas31.13312-104.02012
Helianthus annuusANN_53ANN132112.54872United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN132214.3509125United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN132311.921725United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN132414.114325United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN132513.659975United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN132613.353475United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN132713.7479125United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN132812.5465375United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN132913.1625875United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN133012.6046875United StatesTexas31.03955-103.13683
Helianthus annuusANN_54ANN133110.833625United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN133211.91695United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN133311.748925United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN133411.8331875United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN133512.5646875United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN133614.0415125United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN133811.4889United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN133912.1393375United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN134011.530975United StatesTexas29.11355-97.39837
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
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93415 Straubing
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dominik.grimm [at] hswt.de

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