Details for Phenotype: Seed perimeter (ID: 66)

Phenotype ID:
66
Name:
Seed perimeter
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed morphology trait
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Perimeter of an individual seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_57ANN136513.8859875United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN136613.7977United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN136712.3043875United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN136813.63215United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN136912.3238United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN137013.0193125United StatesTexas27.63854-97.24526
Helianthus annuusANN_58ANN137111.1227875United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN137211.629825United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN137312.0123875United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN137413.41565United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN137513.6021375United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN137611.6675625United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN137714.0940625United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN137812.1861625United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN137912.2794375United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN138012.780525United StatesTexas28.24166-97.67443
Helianthus annuusANN_59ANN138110.6897United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN138210.3051125United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN138313.5334375United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN138411.301275United StatesTexas26.50251-97.77181
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
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dominik.grimm [at] hswt.de

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