Details for Phenotype: Seed perimeter (ID: 66)

Phenotype ID:
66
Name:
Seed perimeter
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed morphology trait
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Perimeter of an individual seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_47ANN126313.966United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN126412.0694375United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN126512.4919375United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN126614.9294625United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN126711.8982United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN126811.7667625United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN126914.2607625United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN127012.5179125United StatesArizona32.73158-111.53769
Helianthus annuusANN_50ANN129115.3450625United StatesNew Mexico32.17943-108.38541
Helianthus annuusANN_50ANN129213.044875United StatesNew Mexico32.17943-108.38541
Helianthus annuusANN_50ANN129414.0695625United StatesNew Mexico32.17943-108.38541
Helianthus annuusANN_50ANN130013.2049125United StatesNew Mexico32.17943-108.38541
Helianthus annuusANN_51ANN130213.7501125United StatesNew Mexico32.12876-106.67373
Helianthus annuusANN_52ANN131113.7759United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN131412.7089United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN131514.3791United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN131613.413075United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN131712.6030375United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN131814.1134United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN131912.4248875United StatesTexas31.13312-104.02012
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
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93415 Straubing
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dominik.grimm [at] hswt.de

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