Details for Phenotype: Seed perimeter (ID: 66)

Phenotype ID:
66
Name:
Seed perimeter
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed morphology trait
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Perimeter of an individual seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_44ANN123912.3473United StatesTexas29.05186-99.01808
Helianthus annuusANN_44ANN124011.6652United StatesTexas29.05186-99.01808
Helianthus annuusANN_45ANN124111.1111875United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN124213.3008875United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN124313.5593875United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN124413.1663875United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN124712.8007375United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN124811.72145United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN124912.737425United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN125012.0180375United StatesTexas28.63085-100.1189
Helianthus annuusANN_46ANN125114.16295United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN125214.50475United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN125315.4832875United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN125415.0208625United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN125514.0922375United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN125614.1433125United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN125713.933575United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN125813.449875United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN125913.8641375United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN126013.91995United StatesCalifornia33.92321-116.86432
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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