Details for Phenotype: Seed perimeter (ID: 66)

Phenotype ID:
66
Name:
Seed perimeter
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed morphology trait
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Perimeter of an individual seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_42ANN121514.509375United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN121712.251475United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN121812.5052125United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN121912.8735375United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN122014.12564286United StatesTexas32.92224-97.36547
Helianthus annuusANN_43ANN122114.0215625United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN122214.1747875United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN122312.99115United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN122413.0358625United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN122614.8148375United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN122713.1851875United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN122813.5785875United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN122911.7812875United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN123013.373325United StatesTexas29.73315-97.65574
Helianthus annuusANN_44ANN123214.534United StatesTexas29.05186-99.01808
Helianthus annuusANN_44ANN123312.9906375United StatesTexas29.05186-99.01808
Helianthus annuusANN_44ANN123512.687525United StatesTexas29.05186-99.01808
Helianthus annuusANN_44ANN123612.7451United StatesTexas29.05186-99.01808
Helianthus annuusANN_44ANN123712.435United StatesTexas29.05186-99.01808
Helianthus annuusANN_44ANN123813.495975United StatesTexas29.05186-99.01808
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
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