Details for Phenotype: Seed perimeter (ID: 66)

Phenotype ID:
66
Name:
Seed perimeter
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed morphology trait
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Perimeter of an individual seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_37ANN116813.4242625United StatesColorado40.48679-105.09619
Helianthus annuusANN_37ANN116913.6653375United StatesColorado40.48679-105.09619
Helianthus annuusANN_37ANN117013.962475United StatesColorado40.48679-105.09619
Helianthus annuusANN_38ANN117114.5805625United StatesKansas38.44118-98.63231
Helianthus annuusANN_38ANN117214.3258625United StatesKansas38.44118-98.63231
Helianthus annuusANN_38ANN117513.5599375United StatesKansas38.44118-98.63231
Helianthus annuusANN_38ANN117613.3606United StatesKansas38.44118-98.63231
Helianthus annuusANN_38ANN117815.02835United StatesKansas38.44118-98.63231
Helianthus annuusANN_38ANN117912.3363875United StatesKansas38.44118-98.63231
Helianthus annuusANN_38ANN118013.4662125United StatesKansas38.44118-98.63231
Helianthus annuusANN_40ANN119115.7120875United StatesKansas37.23327-98.66459
Helianthus annuusANN_40ANN119214.79895United StatesKansas37.23327-98.66459
Helianthus annuusANN_40ANN119416.3045375United StatesKansas37.23327-98.66459
Helianthus annuusANN_40ANN119615.63505United StatesKansas37.23327-98.66459
Helianthus annuusANN_40ANN119715.1441375United StatesKansas37.23327-98.66459
Helianthus annuusANN_40ANN119815.966175United StatesKansas37.23327-98.66459
Helianthus annuusANN_42ANN121114.7740125United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN121215.0647375United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN121313.18995United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN121413.1874125United StatesTexas32.92224-97.36547
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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