Details for Phenotype: Seed perimeter (ID: 66)

Phenotype ID:
66
Name:
Seed perimeter
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed morphology trait
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Perimeter of an individual seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_35ANN114615.0225625United StatesUtah40.51274-109.51947
Helianthus annuusANN_35ANN114713.190975United StatesUtah40.51274-109.51947
Helianthus annuusANN_35ANN114815.6491875United StatesUtah40.51274-109.51947
Helianthus annuusANN_35ANN114915.5454United StatesUtah40.51274-109.51947
Helianthus annuusANN_35ANN115014.8207125United StatesUtah40.51274-109.51947
Helianthus annuusANN_36ANN115115.2324625United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN115214.985425United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN115313.7368375United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN115413.690075United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN115515.787275United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN115612.5371375United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN115714.6616875United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN115812.145725United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN115913.2530875United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN116013.458975United StatesWyoming41.77426-107.45885
Helianthus annuusANN_37ANN116313.0197625United StatesColorado40.48679-105.09619
Helianthus annuusANN_37ANN116414.3295875United StatesColorado40.48679-105.09619
Helianthus annuusANN_37ANN116514.9120125United StatesColorado40.48679-105.09619
Helianthus annuusANN_37ANN116613.88125United StatesColorado40.48679-105.09619
Helianthus annuusANN_37ANN116712.8645625United StatesColorado40.48679-105.09619
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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