Details for Phenotype: Seed perimeter (ID: 66)

Phenotype ID:
66
Name:
Seed perimeter
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed morphology trait
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Perimeter of an individual seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_31ANN110915.0923125United StatesUtah40.1781-111.65071
Helianthus annuusANN_31ANN111014.3817125United StatesUtah40.1781-111.65071
Helianthus annuusANN_32ANN111513.0899625United StatesUtah41.48524-112.0556
Helianthus annuusANN_32ANN111614.3915United StatesUtah41.48524-112.0556
Helianthus annuusANN_32ANN111713.0773United StatesUtah41.48524-112.0556
Helianthus annuusANN_32ANN111813.648825United StatesUtah41.48524-112.0556
Helianthus annuusANN_32ANN111913.1772United StatesUtah41.48524-112.0556
Helianthus annuusANN_32ANN112013.01395United StatesUtah41.48524-112.0556
Helianthus annuusANN_33ANN112314.554525United StatesUtah40.77115-112.15004
Helianthus annuusANN_33ANN112413.143675United StatesUtah40.77115-112.15004
Helianthus annuusANN_33ANN112913.8964625United StatesUtah40.77115-112.15004
Helianthus annuusANN_33ANN113014.6199United StatesUtah40.77115-112.15004
Helianthus annuusANN_34ANN113315.1960125United StatesUtah40.69149-112.26423
Helianthus annuusANN_34ANN113513.5178375United StatesUtah40.69149-112.26423
Helianthus annuusANN_34ANN113613.310775United StatesUtah40.69149-112.26423
Helianthus annuusANN_34ANN113714.5340375United StatesUtah40.69149-112.26423
Helianthus annuusANN_34ANN113812.9316125United StatesUtah40.69149-112.26423
Helianthus annuusANN_35ANN114314.9667625United StatesUtah40.51274-109.51947
Helianthus annuusANN_35ANN114414.631375United StatesUtah40.51274-109.51947
Helianthus annuusANN_35ANN114514.6267375United StatesUtah40.51274-109.51947
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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