Details for Phenotype: Seed perimeter (ID: 66)

Phenotype ID:
66
Name:
Seed perimeter
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed morphology trait
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Perimeter of an individual seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_28ANN108013.5477625United StatesUtah38.21652-112.64767
Helianthus annuusANN_29ANN108414.1743United StatesUtah39.55006-112.35661
Helianthus annuusANN_29ANN108514.019025United StatesUtah39.55006-112.35661
Helianthus annuusANN_29ANN108613.1595United StatesUtah39.55006-112.35661
Helianthus annuusANN_29ANN108912.915425United StatesUtah39.55006-112.35661
Helianthus annuusANN_29ANN109014.847125United StatesUtah39.55006-112.35661
Helianthus annuusANN_30ANN109113.98645United StatesUtah39.7148-112.20662
Helianthus annuusANN_30ANN109212.4019875United StatesUtah39.7148-112.20662
Helianthus annuusANN_30ANN109313.012725United StatesUtah39.7148-112.20662
Helianthus annuusANN_30ANN109414.2072875United StatesUtah39.7148-112.20662
Helianthus annuusANN_30ANN109513.687725United StatesUtah39.7148-112.20662
Helianthus annuusANN_30ANN109612.9960125United StatesUtah39.7148-112.20662
Helianthus annuusANN_30ANN109714.0140125United StatesUtah39.7148-112.20662
Helianthus annuusANN_30ANN109812.623925United StatesUtah39.7148-112.20662
Helianthus annuusANN_31ANN110115.320425United StatesUtah40.1781-111.65071
Helianthus annuusANN_31ANN110314.2813875United StatesUtah40.1781-111.65071
Helianthus annuusANN_31ANN110412.206225United StatesUtah40.1781-111.65071
Helianthus annuusANN_31ANN110513.1229125United StatesUtah40.1781-111.65071
Helianthus annuusANN_31ANN110615.433025United StatesUtah40.1781-111.65071
Helianthus annuusANN_31ANN110713.209175United StatesUtah40.1781-111.65071
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
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93415 Straubing
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dominik.grimm [at] hswt.de

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