Details for Phenotype: Total RGB (ID: 56)

Phenotype ID:
56
Name:
Total RGB
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Leaf traits
Sub-Category:
Leaf colour
Type:
Quantitative
Ontology:
leaf color
Unit:
No unit available
#Samples:
596
#Populations:
64
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Sum of RGB values for leaf colour
Phenotype Scoring
A evenly illuminated, representative section was selected for a digital image of a leaf for each line (see Leaf_perimeter). RGB values were extracted using the Color histogram plugin (https://imagej.nih.gov/ij/plugins/color-histogram.html) for Fiji (Schneider et al., 2012; Schindelin et al., 2012).

Population Map (64 Populations with 596 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_36ANN1152178.917United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN1153184.065United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN1154182.212United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN1155180.592United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN1156189.458United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN1157186.426United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN1159174.621United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN1160193.55United StatesWyoming41.77426-107.45885
Helianthus annuusANN_37ANN1161155.396United StatesColorado40.48679-105.09619
Helianthus annuusANN_37ANN1162183.998United StatesColorado40.48679-105.09619
Helianthus annuusANN_37ANN1163187.889United StatesColorado40.48679-105.09619
Helianthus annuusANN_37ANN1164187.786United StatesColorado40.48679-105.09619
Helianthus annuusANN_37ANN1165172.533United StatesColorado40.48679-105.09619
Helianthus annuusANN_37ANN1166175.622United StatesColorado40.48679-105.09619
Helianthus annuusANN_37ANN1167162.785United StatesColorado40.48679-105.09619
Helianthus annuusANN_37ANN1168173.275United StatesColorado40.48679-105.09619
Helianthus annuusANN_37ANN1169144.516United StatesColorado40.48679-105.09619
Helianthus annuusANN_37ANN1170151.648United StatesColorado40.48679-105.09619
Helianthus annuusANN_38ANN1171143.829United StatesKansas38.44118-98.63231
Helianthus annuusANN_38ANN1172176.766United StatesKansas38.44118-98.63231
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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