Details for Phenotype: Seed eccentricity area index (ID: 86)

Phenotype ID:
86
Name:
Seed eccentricity area index
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the area of the seed outside the ellipse to the total area of the seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_19ANN09860.3842375United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN09870.42755United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN09880.3747United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_20ANN09910.3924United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN09920.418175United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN09960.3926625United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN09970.4029375United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN09980.418425United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN09990.395075United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN10000.439025United StatesColorado38.44366-107.62928
Helianthus annuusANN_21ANN10010.386125United StatesColorado38.91004-108.3738
Helianthus annuusANN_21ANN10020.4008United StatesColorado38.91004-108.3738
Helianthus annuusANN_21ANN10030.4141875United StatesColorado38.91004-108.3738
Helianthus annuusANN_21ANN10070.4075375United StatesColorado38.91004-108.3738
Helianthus annuusANN_21ANN10080.3850625United StatesColorado38.91004-108.3738
Helianthus annuusANN_21ANN10090.392075United StatesColorado38.91004-108.3738
Helianthus annuusANN_22ANN10110.3922375United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10120.402275United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10130.4561625United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10140.400375United StatesColorado39.00672-108.46384
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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