Details for Phenotype: Seed eccentricity area index (ID: 86)

Phenotype ID:
86
Name:
Seed eccentricity area index
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the area of the seed outside the ellipse to the total area of the seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_16ANN09580.3842United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09590.37965United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09600.399525United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_17ANN09610.4092875United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_17ANN09620.3827375United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_17ANN09670.384225United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_17ANN09680.3930625United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_17ANN09690.4064375United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_17ANN09700.4141125United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_18ANN09720.3843875United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_18ANN09750.3873125United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_18ANN09760.397125United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_18ANN09770.39375United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_18ANN09780.4101125United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_18ANN09800.3882625United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_19ANN09810.392875United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN09820.4093United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN09830.386725United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN09840.4006125United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN09850.3931875United StatesNew Mexico36.7268-104.01913
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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