Details for Phenotype: Seed shape index internal (ID: 85)

Phenotype ID:
85
Name:
Seed shape index internal
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the internal ellipse's height to its width
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_42ANN12151.7798125United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN12171.532425United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN12181.515075United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN12191.483475United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN12201.615214286United StatesTexas32.92224-97.36547
Helianthus annuusANN_43ANN12211.762625United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12221.6852375United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12231.6271375United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12241.5385125United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12261.76545United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12271.8837United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12282.0454375United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12291.5895625United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12301.5888625United StatesTexas29.73315-97.65574
Helianthus annuusANN_44ANN12321.7769625United StatesTexas29.05186-99.01808
Helianthus annuusANN_44ANN12332.0785United StatesTexas29.05186-99.01808
Helianthus annuusANN_44ANN12351.7495875United StatesTexas29.05186-99.01808
Helianthus annuusANN_44ANN12361.8126375United StatesTexas29.05186-99.01808
Helianthus annuusANN_44ANN12371.7004875United StatesTexas29.05186-99.01808
Helianthus annuusANN_44ANN12382.0295375United StatesTexas29.05186-99.01808
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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