Details for Phenotype: Seed shape index internal (ID: 85)

Phenotype ID:
85
Name:
Seed shape index internal
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the internal ellipse's height to its width
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_01ANN08011.9956United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08021.7991625United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08042.129466667United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08051.75595United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08061.99775United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08082.100525United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08091.9851375United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08102.263525United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_02ANN08111.8657125United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08121.6478United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08141.8536625United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08151.4699United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08161.5937875United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08171.813625United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08181.6419United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08191.684725United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_03ANN08211.64065United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08221.9015United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08231.684275United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08241.939125United StatesCalifornia36.24542-120.31654
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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