Details for Phenotype: Seed distal eccentricity (ID: 84)

Phenotype ID:
84
Name:
Seed distal eccentricity
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the height of the internal ellipse to the distance between the top of the ellipse and the bottom of the seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_37ANN11680.8838875United StatesColorado40.48679-105.09619
Helianthus annuusANN_37ANN11690.885975United StatesColorado40.48679-105.09619
Helianthus annuusANN_37ANN11700.8736875United StatesColorado40.48679-105.09619
Helianthus annuusANN_38ANN11710.8760125United StatesKansas38.44118-98.63231
Helianthus annuusANN_38ANN11720.8615875United StatesKansas38.44118-98.63231
Helianthus annuusANN_38ANN11750.8536375United StatesKansas38.44118-98.63231
Helianthus annuusANN_38ANN11760.8518125United StatesKansas38.44118-98.63231
Helianthus annuusANN_38ANN11780.868125United StatesKansas38.44118-98.63231
Helianthus annuusANN_38ANN11790.8627125United StatesKansas38.44118-98.63231
Helianthus annuusANN_38ANN11800.865125United StatesKansas38.44118-98.63231
Helianthus annuusANN_40ANN11910.8302625United StatesKansas37.23327-98.66459
Helianthus annuusANN_40ANN11920.8474United StatesKansas37.23327-98.66459
Helianthus annuusANN_40ANN11940.789125United StatesKansas37.23327-98.66459
Helianthus annuusANN_40ANN11960.8591375United StatesKansas37.23327-98.66459
Helianthus annuusANN_40ANN11970.845425United StatesKansas37.23327-98.66459
Helianthus annuusANN_40ANN11980.82815United StatesKansas37.23327-98.66459
Helianthus annuusANN_42ANN12110.8662875United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN12120.8416United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN12130.8063625United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN12140.8558United StatesTexas32.92224-97.36547
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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