Details for Phenotype: Seed distal eccentricity (ID: 84)

Phenotype ID:
84
Name:
Seed distal eccentricity
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the height of the internal ellipse to the distance between the top of the ellipse and the bottom of the seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_31ANN11090.8666United StatesUtah40.1781-111.65071
Helianthus annuusANN_31ANN11100.880075United StatesUtah40.1781-111.65071
Helianthus annuusANN_32ANN11150.8590125United StatesUtah41.48524-112.0556
Helianthus annuusANN_32ANN11160.785325United StatesUtah41.48524-112.0556
Helianthus annuusANN_32ANN11170.8598375United StatesUtah41.48524-112.0556
Helianthus annuusANN_32ANN11180.8670375United StatesUtah41.48524-112.0556
Helianthus annuusANN_32ANN11190.8648625United StatesUtah41.48524-112.0556
Helianthus annuusANN_32ANN11200.8262375United StatesUtah41.48524-112.0556
Helianthus annuusANN_33ANN11230.85355United StatesUtah40.77115-112.15004
Helianthus annuusANN_33ANN11240.8415United StatesUtah40.77115-112.15004
Helianthus annuusANN_33ANN11290.8370875United StatesUtah40.77115-112.15004
Helianthus annuusANN_33ANN11300.8620125United StatesUtah40.77115-112.15004
Helianthus annuusANN_34ANN11330.86445United StatesUtah40.69149-112.26423
Helianthus annuusANN_34ANN11350.8826375United StatesUtah40.69149-112.26423
Helianthus annuusANN_34ANN11360.8606875United StatesUtah40.69149-112.26423
Helianthus annuusANN_34ANN11370.873725United StatesUtah40.69149-112.26423
Helianthus annuusANN_34ANN11380.8422875United StatesUtah40.69149-112.26423
Helianthus annuusANN_35ANN11430.8481375United StatesUtah40.51274-109.51947
Helianthus annuusANN_35ANN11440.8679625United StatesUtah40.51274-109.51947
Helianthus annuusANN_35ANN11450.879175United StatesUtah40.51274-109.51947
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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