Details for Phenotype: Seed distal eccentricity (ID: 84)

Phenotype ID:
84
Name:
Seed distal eccentricity
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the height of the internal ellipse to the distance between the top of the ellipse and the bottom of the seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_01ANN08010.8560375United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08020.886475United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08040.8573United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08050.858125United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08060.8642625United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08080.8713United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08090.8131United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08100.8690875United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_02ANN08110.8703375United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08120.8679United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08140.846475United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08150.84875United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08160.8675875United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08170.84785United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08180.8421875United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08190.86845United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_03ANN08210.84495United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08220.834975United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08230.8477125United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08240.8594875United StatesCalifornia36.24542-120.31654
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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