Details for Phenotype: Seed proximal eccentricity (ID: 83)

Phenotype ID:
83
Name:
Seed proximal eccentricity
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the height of the internal ellipse to the distance between the bottom of the ellipse and the top of the seed.
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_31ANN11090.8894United StatesUtah40.1781-111.65071
Helianthus annuusANN_31ANN11100.8859125United StatesUtah40.1781-111.65071
Helianthus annuusANN_32ANN11150.8836125United StatesUtah41.48524-112.0556
Helianthus annuusANN_32ANN11160.8777125United StatesUtah41.48524-112.0556
Helianthus annuusANN_32ANN11170.881825United StatesUtah41.48524-112.0556
Helianthus annuusANN_32ANN11180.8853625United StatesUtah41.48524-112.0556
Helianthus annuusANN_32ANN11190.8796125United StatesUtah41.48524-112.0556
Helianthus annuusANN_32ANN11200.8799625United StatesUtah41.48524-112.0556
Helianthus annuusANN_33ANN11230.853525United StatesUtah40.77115-112.15004
Helianthus annuusANN_33ANN11240.883875United StatesUtah40.77115-112.15004
Helianthus annuusANN_33ANN11290.880375United StatesUtah40.77115-112.15004
Helianthus annuusANN_33ANN11300.87975United StatesUtah40.77115-112.15004
Helianthus annuusANN_34ANN11330.881725United StatesUtah40.69149-112.26423
Helianthus annuusANN_34ANN11350.88315United StatesUtah40.69149-112.26423
Helianthus annuusANN_34ANN11360.872175United StatesUtah40.69149-112.26423
Helianthus annuusANN_34ANN11370.8732United StatesUtah40.69149-112.26423
Helianthus annuusANN_34ANN11380.875925United StatesUtah40.69149-112.26423
Helianthus annuusANN_35ANN11430.8859625United StatesUtah40.51274-109.51947
Helianthus annuusANN_35ANN11440.868925United StatesUtah40.51274-109.51947
Helianthus annuusANN_35ANN11450.8875125United StatesUtah40.51274-109.51947
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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