Details for Phenotype: Seed eccentricity (ID: 82)

Phenotype ID:
82
Name:
Seed eccentricity
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the height of the internal ellipse to the Maximum Height.
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_22ANN10150.7901125United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10160.7597375United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10170.77406United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10180.776275United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10190.78665United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10200.7581125United StatesColorado39.00672-108.46384
Helianthus annuusANN_23ANN10210.7780375United StatesNevada40.66257-116.23876
Helianthus annuusANN_23ANN10220.771575United StatesNevada40.66257-116.23876
Helianthus annuusANN_23ANN10230.757683333United StatesNevada40.66257-116.23876
Helianthus annuusANN_23ANN10240.7228125United StatesNevada40.66257-116.23876
Helianthus annuusANN_23ANN10250.755725United StatesNevada40.66257-116.23876
Helianthus annuusANN_23ANN10260.729025United StatesNevada40.66257-116.23876
Helianthus annuusANN_23ANN10290.751275United StatesNevada40.66257-116.23876
Helianthus annuusANN_23ANN10300.775825United StatesNevada40.66257-116.23876
Helianthus annuusANN_24ANN10310.77645United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10320.7798375United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10330.7779625United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10340.75995United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10350.7637375United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10360.7550375United StatesNevada39.48892-119.99511
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
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dominik.grimm [at] hswt.de

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