Details for Phenotype: Seed eccentricity (ID: 82)

Phenotype ID:
82
Name:
Seed eccentricity
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the height of the internal ellipse to the Maximum Height.
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_19ANN09860.7762625United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN09870.7323United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN09880.772United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_20ANN09910.759733333United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN09920.7356United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN09960.774675United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN09970.78085United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN09980.75045United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN09990.7765875United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN10000.7185875United StatesColorado38.44366-107.62928
Helianthus annuusANN_21ANN10010.77435United StatesColorado38.91004-108.3738
Helianthus annuusANN_21ANN10020.7597875United StatesColorado38.91004-108.3738
Helianthus annuusANN_21ANN10030.72United StatesColorado38.91004-108.3738
Helianthus annuusANN_21ANN10070.7216375United StatesColorado38.91004-108.3738
Helianthus annuusANN_21ANN10080.7770125United StatesColorado38.91004-108.3738
Helianthus annuusANN_21ANN10090.748875United StatesColorado38.91004-108.3738
Helianthus annuusANN_22ANN10110.767375United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10120.7565125United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10130.6681625United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10140.7531United StatesColorado39.00672-108.46384
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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