Details for Phenotype: Seed eccentricity (ID: 82)

Phenotype ID:
82
Name:
Seed eccentricity
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the height of the internal ellipse to the Maximum Height.
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_01ANN08010.76115United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08020.791725United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08040.763033333United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08050.75545United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08060.76355United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08080.7646United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08090.7254875United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08100.7769875United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_02ANN08110.7799875United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08120.7775United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08140.749375United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08150.7455875United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08160.7534375United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08170.7552875United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08180.7296125United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08190.7622375United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_03ANN08210.7487125United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08220.7455United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08230.75535United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08240.7635125United StatesCalifornia36.24542-120.31654
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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