Details for Phenotype: Seed rectangular (ID: 79)

Phenotype ID:
79
Name:
Seed rectangular
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the area of the rectangle bounding the seed to the area of the rectangle bounded by the seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_01ANN08010.496325United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08020.491875United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08040.476933333United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08050.46855United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08060.482525United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08080.457625United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08090.4305United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08100.4767United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_02ANN08110.4665375United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08120.4753125United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08140.510475United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08150.4947375United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08160.459925United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08170.4839875United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08180.46865United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08190.45695United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_03ANN08210.4523125United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08220.4576United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08230.4517United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08240.4631375United StatesCalifornia36.24542-120.31654
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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