Details for Phenotype: Seed curved shape index (ID: 76)

Phenotype ID:
76
Name:
Seed curved shape index
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of Curved Height to the width of the seed at mid-curved-height, as measured perpendicular to the curved height line
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_01ANN08012.1250375United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08021.834325United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08042.233166667United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08051.8743625United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08062.134575United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08082.2204375United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08092.2097United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08102.3236625United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_02ANN08111.9387125United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08121.716125United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08142.078325United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08151.6389125United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08161.7277625United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08171.9378875United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08181.8616375United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08191.82525United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_03ANN08211.7305125United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08222.06345United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08231.8251375United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08242.056875United StatesCalifornia36.24542-120.31654
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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