Details for Phenotype: Seed shape index external II (ID: 75)

Phenotype ID:
75
Name:
Seed shape index external II
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of Height Midwidth to Width Mid-height
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_01ANN08012.094175United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08021.7941United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08042.197466667United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08051.84395United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08062.0592625United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08082.1626375United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08092.1583125United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08102.31075United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_02ANN08111.8978United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08121.6757875United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08141.98United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08151.5745625United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08161.6885375United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08171.90085United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08181.784625United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08191.75195United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_03ANN08211.7295United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08222.0392375United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08231.755275United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08242.0244125United StatesCalifornia36.24542-120.31654
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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