Details for Phenotype: Seed shape index external I (ID: 74)

Phenotype ID:
74
Name:
Seed shape index external I
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the Maximum Height to Maximum Width
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_05ANN08481.7895United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_06ANN08511.83315United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08521.8089875United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08532.1076125United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08541.9726625United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08551.9523125United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08561.82305United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08571.74475United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08581.7424125United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08591.6589875United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08601.8853625United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_07ANN08611.838525United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08621.907557143United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08631.9444875United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08642.0990375United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08651.946075United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08662.120083333United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08672.00975United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08681.7272625United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08691.837075United StatesCalifornia38.7892-119.9363
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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