Details for Phenotype: Seed shape index external I (ID: 74)

Phenotype ID:
74
Name:
Seed shape index external I
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the Maximum Height to Maximum Width
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_03ANN08251.6395United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08261.849825United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08271.64715United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08281.7046625United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_04ANN08312.202275United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08321.851225United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08331.7756375United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08341.579275United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08352.1407125United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08361.9996875United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08371.7723United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08391.782275United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08401.746775United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_05ANN08412.007525United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN08421.5681625United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN08431.8295625United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN08441.86805United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN08451.918925United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN08461.5687875United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN08471.6603United StatesCalifornia33.69278-116.18411
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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