Details for Phenotype: Seed shape index external I (ID: 74)

Phenotype ID:
74
Name:
Seed shape index external I
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the Maximum Height to Maximum Width
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_01ANN08012.0348125United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08021.746025United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08042.1072United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08051.822425United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08062.0244625United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08082.0774625United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08092.030275United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08102.1879375United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_02ANN08111.82545United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08121.590625United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08141.9076625United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08151.53045United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08161.619525United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08171.817825United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08181.75595United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08191.6800375United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_03ANN08211.69125United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08221.93445United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08231.689775United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08241.953075United StatesCalifornia36.24542-120.31654
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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