Details for Phenotype: Seed HW ratio (ID: 73)

Phenotype ID:
73
Name:
Seed HW ratio
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Ratio between curved length and maximum seed width
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_01ANN08012.062104112United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08021.798810297United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08042.125704693United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08051.862671855United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08062.062986585United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08082.112055026United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08092.083278714United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08102.199545998United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_02ANN08111.864979035United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08121.637037538United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08141.979350492United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08151.589672026United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08161.665080736United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08171.854147611United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08181.802885689United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08191.739436847United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_03ANN08211.733937216United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08221.989063379United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08231.740462218United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08241.994682172United StatesCalifornia36.24542-120.31654
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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