Details for Phenotype: Seed curved height (ID: 72)

Phenotype ID:
72
Name:
Seed curved height
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed length
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Length measured along a curved line through the seed (equidistant from both seed borders)
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_47ANN12635.2051United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12644.71505United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12654.6498625United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12665.6497United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12674.36765United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12684.3496125United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12695.362825United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12704.69875United StatesArizona32.73158-111.53769
Helianthus annuusANN_50ANN12915.7713625United StatesNew Mexico32.17943-108.38541
Helianthus annuusANN_50ANN12924.99605United StatesNew Mexico32.17943-108.38541
Helianthus annuusANN_50ANN12945.214625United StatesNew Mexico32.17943-108.38541
Helianthus annuusANN_50ANN13005.0431United StatesNew Mexico32.17943-108.38541
Helianthus annuusANN_51ANN13025.2758United StatesNew Mexico32.12876-106.67373
Helianthus annuusANN_52ANN13115.3066United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13144.87045United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13155.6504125United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13164.8887625United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13174.893575United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13185.393725United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13194.6478125United StatesTexas31.13312-104.02012
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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