Details for Phenotype: Seed curved height (ID: 72)

Phenotype ID:
72
Name:
Seed curved height
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed length
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Length measured along a curved line through the seed (equidistant from both seed borders)
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_01ANN08015.8924625United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08025.813575United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08046.246666667United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08056.4388375United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08066.449025United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08086.3676875United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08095.4431125United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08107.158175United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_02ANN08115.2206125United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08124.8445875United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08144.5902375United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08154.6918375United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08164.9870625United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08175.21975United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08184.9466United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08194.0385375United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_03ANN08215.216225United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08225.4811625United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08235.8091625United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08245.4201United StatesCalifornia36.24542-120.31654
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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