Details for Phenotype: Seed maximum height (ID: 71)

Phenotype ID:
71
Name:
Seed maximum height
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed length
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Maximum width of the seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_01ANN08015.797025United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08025.632975United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08046.1489United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08056.2918United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08066.3182625United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08086.2388625United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08095.2996United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08107.0577625United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_02ANN08115.0866125United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08124.70165United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08144.4026625United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08154.5111625United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08164.8498125United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08175.113075United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08184.7757375United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08193.8933375United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_03ANN08215.087925United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08225.326075United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08235.6369375United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08245.2956375United StatesCalifornia36.24542-120.31654
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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