Details for Phenotype: Seed height mid width (ID: 70)

Phenotype ID:
70
Name:
Seed height mid width
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed length
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Length measured at 1/2 of the seed's width
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_01ANN08015.7507125United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08025.586675United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08046.0819United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08056.236225United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08066.2097625United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08086.15815United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08095.232125United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08107.0061625United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_02ANN08115.0681United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08124.677825United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08144.3444625United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08154.4648375United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08164.822025United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08175.0800125United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08184.7188625United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08193.84175United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_03ANN08215.0416125United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08225.3062375United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08235.5866625United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08245.2467United StatesCalifornia36.24542-120.31654
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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