Details for Phenotype: Seed maximum width (ID: 69)

Phenotype ID:
69
Name:
Seed maximum width
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed width
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Maximum width of the seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_01ANN08012.8575United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08023.2319United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08042.938633333United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08053.456775United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08063.1260625United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08083.014925United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08092.6127625United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08103.2543875United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_02ANN08112.7992875United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08122.9593625United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08142.3190625United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08152.95145United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08162.9950875United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08172.815175United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08182.7437125United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08192.32175United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_03ANN08213.0083125United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08222.75565United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08233.3377125United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08242.717275United StatesCalifornia36.24542-120.31654
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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