Details for Phenotype: Seed width mid height (ID: 68)

Phenotype ID:
68
Name:
Seed width mid height
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed width
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Width measured at 1/2 of the seed's length
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_47ANN12632.667United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12642.2132375United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12652.6498125United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12662.9726United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12672.5452875United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12682.497675United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12692.7172875United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12702.43945United StatesArizona32.73158-111.53769
Helianthus annuusANN_50ANN12912.8389625United StatesNew Mexico32.17943-108.38541
Helianthus annuusANN_50ANN12922.382575United StatesNew Mexico32.17943-108.38541
Helianthus annuusANN_50ANN12942.7887United StatesNew Mexico32.17943-108.38541
Helianthus annuusANN_50ANN13002.5691United StatesNew Mexico32.17943-108.38541
Helianthus annuusANN_51ANN13022.358775United StatesNew Mexico32.12876-106.67373
Helianthus annuusANN_52ANN13112.6988United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13142.454United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13152.5307375United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13162.809875United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13172.4275625United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13182.87735United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13192.5836625United StatesTexas31.13312-104.02012
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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