Details for Phenotype: Seed width mid height (ID: 68)

Phenotype ID:
68
Name:
Seed width mid height
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed width
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Width measured at 1/2 of the seed's length
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_24ANN10372.5624875United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10382.7278375United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10392.8667625United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10402.5889375United StatesNevada39.48892-119.99511
Helianthus annuusANN_25ANN10452.17355United StatesNevada36.79654-114.09841
Helianthus annuusANN_25ANN10462.7199125United StatesNevada36.79654-114.09841
Helianthus annuusANN_26ANN10512.11005United StatesUtah37.13733-113.51348
Helianthus annuusANN_27ANN10612.5003United StatesUtah37.13137-112.56561
Helianthus annuusANN_27ANN10622.3455375United StatesUtah37.13137-112.56561
Helianthus annuusANN_27ANN10682.656425United StatesUtah37.13137-112.56561
Helianthus annuusANN_27ANN10692.7027125United StatesUtah37.13137-112.56561
Helianthus annuusANN_27ANN10702.919675United StatesUtah37.13137-112.56561
Helianthus annuusANN_28ANN10712.9183625United StatesUtah38.21652-112.64767
Helianthus annuusANN_28ANN10722.8151875United StatesUtah38.21652-112.64767
Helianthus annuusANN_28ANN10732.8641125United StatesUtah38.21652-112.64767
Helianthus annuusANN_28ANN10752.5836625United StatesUtah38.21652-112.64767
Helianthus annuusANN_28ANN10762.5783625United StatesUtah38.21652-112.64767
Helianthus annuusANN_28ANN10772.9501125United StatesUtah38.21652-112.64767
Helianthus annuusANN_28ANN10782.8614875United StatesUtah38.21652-112.64767
Helianthus annuusANN_28ANN10792.9633625United StatesUtah38.21652-112.64767
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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