Details for Phenotype: Seed width mid height (ID: 68)

Phenotype ID:
68
Name:
Seed width mid height
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed width
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Width measured at 1/2 of the seed's length
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_01ANN08012.7543375United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08023.1207625United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08042.783433333United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08053.386675United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08063.02155United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08082.8601625United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08092.4275625United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN08103.0572625United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_02ANN08112.68155United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08122.7966375United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08142.2053United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08152.8402875United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08162.8561875United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08172.67495United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08182.668325United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN08192.1960625United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_03ANN08212.9157125United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08222.6048125United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08233.18295United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08242.596875United StatesCalifornia36.24542-120.31654
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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