Details for Phenotype: Seed perimeter (ID: 66)

Phenotype ID:
66
Name:
Seed perimeter
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed morphology trait
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Perimeter of an individual seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_05ANN084811.5470375United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_06ANN085112.488225United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN085212.9838United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN085314.432275United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN085414.260775United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN085514.304425United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN085613.0232125United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN085712.799475United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN085812.8095125United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN085913.820025United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN086013.0859United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_07ANN086115.4994United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN086214.43587143United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN086315.5504875United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN086415.021725United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN086514.0335125United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN086613.90633333United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN086714.4784United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN086813.9568375United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN086914.0711625United StatesCalifornia38.7892-119.9363
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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