Details for Phenotype: Seed perimeter (ID: 66)

Phenotype ID:
66
Name:
Seed perimeter
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed morphology trait
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Perimeter of an individual seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_03ANN082512.601375United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN082614.506United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN082713.6338United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN082814.63775United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_04ANN083111.0554125United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN083211.7017125United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN083312.0814United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN083411.80315United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN083512.567775United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN083613.0442375United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN083711.6793625United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN083912.8950625United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN084013.0328United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_05ANN084114.215375United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN084212.9662375United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN084312.3643875United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN084413.3067875United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN084513.9901United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN084613.223725United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN084713.317075United StatesCalifornia33.69278-116.18411
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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