Details for Phenotype: Seed perimeter (ID: 66)

Phenotype ID:
66
Name:
Seed perimeter
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed morphology trait
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Perimeter of an individual seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_01ANN080115.3118375United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN080215.461375United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN080416.0058United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN080517.2152United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN080616.7376125United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN080816.2292125United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN080913.801425United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN081018.2548375United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_02ANN081113.6180375United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN081213.271475United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN081412.2164375United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN081513.232575United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN081613.7669625United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN081713.9913375United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN081813.350275United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN081910.9057125United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_03ANN082114.0902375United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN082214.3749625United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN082315.7478125United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN082414.1141125United StatesCalifornia36.24542-120.31654
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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