Details for Phenotype: Total RGB (ID: 56)

Phenotype ID:
56
Name:
Total RGB
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Leaf traits
Sub-Category:
Leaf colour
Type:
Quantitative
Ontology:
leaf color
Unit:
No unit available
#Samples:
596
#Populations:
64
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Sum of RGB values for leaf colour
Phenotype Scoring
A evenly illuminated, representative section was selected for a digital image of a leaf for each line (see Leaf_perimeter). RGB values were extracted using the Color histogram plugin (https://imagej.nih.gov/ij/plugins/color-histogram.html) for Fiji (Schneider et al., 2012; Schindelin et al., 2012).

Population Map (64 Populations with 596 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_01ANN0801181.712United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN0802179.288United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN0803170.933United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN0804192.294United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN0805197.055United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN0806147.265United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN0807192.989United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN0808156.409United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN0809178.095United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_01ANN0810186.911United StatesCalifornia38.56535-121.63765
Helianthus annuusANN_02ANN0811172.647United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN0812194.174United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN0813162.757United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN0814183.588United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN0815173.49United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN0816168.897United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN0817181.943United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN0818162.9United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_02ANN0820166.745United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_03ANN0821152.784United StatesCalifornia36.24542-120.31654
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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