Details for Phenotype: Seed eccentricity area index (ID: 86)

Phenotype ID:
86
Name:
Seed eccentricity area index
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the area of the seed outside the ellipse to the total area of the seed
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_10ANN08930.4383625United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_10ANN08940.4029875United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_10ANN08970.424925United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_10ANN08980.4406125United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_11ANN09010.386475United StatesArizona35.19566-114.06666
Helianthus annuusANN_11ANN09020.3922375United StatesArizona35.19566-114.06666
Helianthus annuusANN_11ANN09030.402183333United StatesArizona35.19566-114.06666
Helianthus annuusANN_11ANN09070.410066667United StatesArizona35.19566-114.06666
Helianthus annuusANN_11ANN09080.3986United StatesArizona35.19566-114.06666
Helianthus annuusANN_12ANN09110.3817375United StatesArizona35.2533-112.13355
Helianthus annuusANN_12ANN09120.4147United StatesArizona35.2533-112.13355
Helianthus annuusANN_12ANN09130.40715United StatesArizona35.2533-112.13355
Helianthus annuusANN_12ANN09140.3818625United StatesArizona35.2533-112.13355
Helianthus annuusANN_12ANN09190.393675United StatesArizona35.2533-112.13355
Helianthus annuusANN_12ANN09200.400425United StatesArizona35.2533-112.13355
Helianthus annuusANN_13ANN09210.401325United StatesArizona34.75056-112.01697
Helianthus annuusANN_13ANN09220.437175United StatesArizona34.75056-112.01697
Helianthus annuusANN_13ANN09230.3806United StatesArizona34.75056-112.01697
Helianthus annuusANN_13ANN09240.37868United StatesArizona34.75056-112.01697
Helianthus annuusANN_13ANN09270.3851United StatesArizona34.75056-112.01697
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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