Details for Phenotype: Seed shape index internal (ID: 85)

Phenotype ID:
85
Name:
Seed shape index internal
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the internal ellipse's height to its width
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_03ANN08251.6221875United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08261.8286875United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08271.6570875United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08281.7037875United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_04ANN08312.024075United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08321.7856875United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08331.7902125United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08341.5383375United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08352.1889United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08362.0265United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08371.75015United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08391.760325United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08401.5595375United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_05ANN08411.9490375United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN08421.59965United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN08431.8074875United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN08441.770975United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN08451.8919125United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN08461.62175United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN08471.6574375United StatesCalifornia33.69278-116.18411
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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