Details for Phenotype: Seed proximal eccentricity (ID: 83)

Phenotype ID:
83
Name:
Seed proximal eccentricity
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the height of the internal ellipse to the distance between the bottom of the ellipse and the top of the seed.
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_05ANN08480.8819625United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_06ANN08510.8892United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08520.88755United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08530.8750125United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08540.8731375United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08550.8844United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08560.870925United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08570.84205United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08580.887725United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08590.8770125United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08600.8783875United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_07ANN08610.8861United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08620.862685714United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08630.86085United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08640.8756United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08650.8846875United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08660.843366667United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08670.88435United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08680.8888125United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08690.8903875United StatesCalifornia38.7892-119.9363
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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