Details for Phenotype: Seed curved shape index (ID: 76)

Phenotype ID:
76
Name:
Seed curved shape index
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of Curved Height to the width of the seed at mid-curved-height, as measured perpendicular to the curved height line
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_55ANN13431.4897875United StatesTexas28.66061-96.58348
Helianthus annuusANN_10ANN08941.553775United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_31ANN11031.5767875United StatesUtah40.1781-111.65071
Helianthus annuusANN_60ANN13981.5839125United StatesTexas27.28522-97.66729
Helianthus annuusANN_55ANN13451.593475United StatesTexas28.66061-96.58348
Helianthus annuusANN_58ANN13711.599775United StatesTexas28.24166-97.67443
Helianthus annuusANN_42ANN12191.60005United StatesTexas32.92224-97.36547
Helianthus annuusANN_11ANN09011.6005375United StatesArizona35.19566-114.06666
Helianthus annuusANN_54ANN13361.625425United StatesTexas29.11355-97.39837
Helianthus annuusANN_15ANN09501.6290375United StatesArizona35.03852-110.7351
Helianthus annuusANN_46ANN12601.6316375United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_15ANN09471.6327United StatesArizona35.03852-110.7351
Helianthus annuusANN_61ANN14041.637825United StatesTexas27.77652-97.66801
Helianthus annuusANN_02ANN08151.6389125United StatesCalifornia36.59499-120.75822
Helianthus annuusANN_58ANN13781.6411United StatesTexas28.24166-97.67443
Helianthus annuusANN_43ANN12301.6411125United StatesTexas29.73315-97.65574
Helianthus annuusANN_56ANN13521.6457375United StatesTexas28.08852-97.06011
Helianthus annuusANN_58ANN13791.646825United StatesTexas28.24166-97.67443
Helianthus annuusANN_17ANN09621.6471United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_55ANN13441.6483625United StatesTexas28.66061-96.58348
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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