Details for Phenotype: Seed curved shape index (ID: 76)

Phenotype ID:
76
Name:
Seed curved shape index
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of Curved Height to the width of the seed at mid-curved-height, as measured perpendicular to the curved height line
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_13ANN09292.3159875United StatesArizona34.75056-112.01697
Helianthus annuusANN_14ANN09311.9231125United StatesArizona36.1086-111.24184
Helianthus annuusANN_14ANN09321.7452875United StatesArizona36.1086-111.24184
Helianthus annuusANN_14ANN09331.8741125United StatesArizona36.1086-111.24184
Helianthus annuusANN_14ANN09341.9812875United StatesArizona36.1086-111.24184
Helianthus annuusANN_14ANN09392.0036875United StatesArizona36.1086-111.24184
Helianthus annuusANN_14ANN09401.97635United StatesArizona36.1086-111.24184
Helianthus annuusANN_15ANN09432.2948625United StatesArizona35.03852-110.7351
Helianthus annuusANN_15ANN09441.8496375United StatesArizona35.03852-110.7351
Helianthus annuusANN_15ANN09471.6327United StatesArizona35.03852-110.7351
Helianthus annuusANN_15ANN09481.9556625United StatesArizona35.03852-110.7351
Helianthus annuusANN_15ANN09491.7740625United StatesArizona35.03852-110.7351
Helianthus annuusANN_15ANN09501.6290375United StatesArizona35.03852-110.7351
Helianthus annuusANN_16ANN09511.798675United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09521.97305United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09532.008375United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09542.1056United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09552.345425United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09562.301825United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09571.9191625United StatesNew Mexico35.40041-108.23557
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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